Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12472274 chr2:239095422 G/A 6.1E-10 481 31.68 28.93 30.45 KM Plot
PRAD rs12472396 chr2:235435440 G/T 3.55E-7 494 43.25 29.05 31.58 KM Plot
PRAD rs12477307 chr2:239110514 G/T 6.17E-6 477 32.47 28.72 27.48 KM Plot
PRAD rs12478898 chr2:232083528 A/G 0.000132 490 31.87 28.8 31.25 KM Plot
PRAD rs12504142 chr4:135694 G/A 2.7E-9 481 33.23 31.37 30.8 KM Plot
PRAD rs12516994 chr5:7306873 C/T 2.12E-8 474 30.78 30.87 10.07 KM Plot
PRAD rs12524274 chr6:52844323 C/A 6.44E-8 489 31.12 32.35 20.93 KM Plot
PRAD rs12527990 chr6:52945132 A/G 4.87E-12 486 31.25 29.13 19.43 KM Plot
PRAD rs12528880 chr6:169317285 G/A 8.67E-8 488 30.77 31.37 28.78 KM Plot
PRAD rs12530154 chr6:52937305 C/T 9.7E-12 482 31.27 31.07 19.43 KM Plot
PRAD rs12535850 chr7:6760405 C/T 7.07E-5 481 30.97 28.8 42.42 KM Plot
PRAD rs12536107 chr7:6779124 G/A 8.88E-5 489 31 30.08 35.28 KM Plot
PRAD rs12537487 chr7:6762978 C/T 5.28E-5 486 30.87 28.8 46.5 KM Plot
PRAD rs12539942 chr7:6776585 C/T 2.53E-5 494 31.23 29.97 31.5 KM Plot
PRAD rs12542071 chr8:10464161 A/G 2.08E-5 494 49.98 29.97 30.78 KM Plot